Summary

Bio::Biblio::PubmedJournalArticle - Representation of a PUBMED journal article

Package variables

Included modules

Inherit

Bio::Biblio::MedlineJournalArticle Bio::Biblio::PubmedArticle

Synopsis

    $obj = new Bio::Biblio::PubmedJournalArticle (

                  # some attributes from MedlineJournalArticle
                  -title => 'Thermal adaptation analyzed by comparison of protein sequences from mesophilic and extremely thermophilic Methanococcus species.',
		  -journal => new Bio::Biblio::MedlineJournal (-issn => '0027-8424'),
		  -volume => 96,
		  -issue => 7,

                  # and some from PubmedArticle
                  -pubmed_history_list =>
                       [ { 'pub_status' => 'pubmed',
			   'date' => '2001-12-1T10:0:00Z' },
			 { 'pub_status' => 'medline',
			   'date' => '2002-1-5T10:1:00Z' } ],
                   -pubmed_status => 'ppublish');
 --- OR ---

    $obj = new Bio::Biblio::PubmedJournalArticle;
    $obj->title ('...');
    $obj->journal (new Bio::Biblio::MedlineJournal (-issn => '0027-8424'));
    $obj->pubmed_status ('ppublish');

Description

A storage object for a PUBMED journal article.
See its place in the class hierarchy in
http://industry.ebi.ac.uk/openBQS/images/bibobjects_perl.gif There are no specific attributes in this class
(however, you can set and get all attributes defined in the parent classes).

Methods

Methods description

None available.

Methods code

sub _accessible {

	my ($self, $attr) = @_;
	return 1 if exists $_allowed{$attr};
        foreach my $parent (@ISA) {
	    return 1 if $parent->_accessible ($attr);
	}

}

sub _attr_type {

	my ($self, $attr) = @_;
	if (exists $_allowed{$attr}) {
	    return $_allowed{$attr};
	} else {
	    foreach my $parent (@ISA) {
		if ($parent->_accessible ($attr)) {
		    return $parent->_attr_type ($attr);
		}
	    }
	}
	return 'unknown';

}

General documentation

    OpenBQS home page: http://industry.ebi.ac.uk/openBQS
    Comments to the Perl client: http://industry.ebi.ac.uk/openBQS/Client_perl.html

User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to
the Bioperl mailing list. Your participation is much appreciated.

  bioperl-l@bioperl.org              - General discussion
  http://bioperl.org/MailList.shtml  - About the mailing lists

Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
email or the web:

  bioperl-bugs@bioperl.org
  http://bioperl.org/bioperl-bugs/

Martin Senger (senger@ebi.ac.uk)

Copyright (c) 2002 European Bioinformatics Institute. All Rights Reserved.
This module is free software; you can redistribute it and/or modify
it under the same terms as Perl itself.

This software is provided "as is" without warranty of any kind.